Molecular Biology Software

Design and analyze DNA, RNA, and amino acid sequences with intelligent software that boosts throughput, drives collaboration, and supports innovative research.

Intelligent molecular biology design software for scientists

Increase throughput

Design and analyze sequences at scale with bulk cloning, alignment, and translation tools.

Reveal more insights

Model and optimize sequences by applying the latest algorithms and advanced in silico design tools to guide experimental work.

Collaborate on sequence design

Leverage Benchling to standardize sequence analysis and registration across teams while improving hand-offs and reducing redundancy of work.

Intuitive sequence visualization

Create contextual views of the biomolecules or entities you're developing — DNA, RNA, amino acid sequences as well as oligos with or without chemical modifications.

Choose detailed maps, including plasmid or linear formats to better visualize sequences.

Designate and document annotations, ORFs, primer and restriction enzyme sites to generate a more informative sequence view.

Comprehensive sequence design tools

Import DNA and RNA in bulk from popular public databases into Benchling.

Perform restriction cloning, Gibson assembly, and Golden Gate assembly — all assisted with a guided wizard.

Simulate bulk cloning methods such as restriction enzyme digestion, Gibson assembly or homologous alignment to develop efficient cloning strategies and predict outcomes.

Perform in silico design of chemically modified RNA and mRNA molecules.

View translation of constructed DNA sequences.